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--- documentation:digitization [2014/09/09 09:01] – [Herbarium W] rstoiber_nhm
+++ documentation:digitization [2018/09/04 05:22] (current) – [Herbarium W] armin_loeckher
@@ Line 278: / Line 278: @@
 ===== Institution specific Information =====
 ==== Herbarium W ====
 This is a work in progress...
@@ Line 301: / Line 302: @@
 \\
 === W: Mamiya-Leaf ===
+Read more about the CaptureOne software [[https://captureintegration.com/the-ideal-tethered-setup/ | here]] and [[https://captureintegration.com/capture-one-pro-8-1-tested-approved/ | here]].
 == W: Mamiya-Leaf hardware setup & working environment ==
-tbd
+> Note This section is work in progess!
-For working with the iXR/Credo setup there is no need for switching off any light and warming up flash-lights as in contrary to Pentacon Setup.
+> Note: Unlike the Pentacon Setup, the iXR/Credo setup does not need any special light conditions. There is no need to switch off any light or warm up the flashes.
-> Note: Immer im Google-Kalender eintragen wer wann scannen wird oder auch gescannt hat!!!
+> Note: Please sign in at the Google Calendar for scanning and fix the time you wish to work on the scanners. There is a very tight schedule for scanning.
+** !! important: please do NOT personalize any settings of the software !! **
+== W: Mamiya-Leaf day to day workflow roundup ==
+> Note: Please read the in-depth startup sequence guide if you are not familiar with the system!
+  * start computer and camera (see computer-startup and camera-startup)
+    * the latest session is loaded.
+  * create new session. Session naming conventions are [Date]_01 for morning and [Date]_02 for afternoon, e.g. YYMMDD_01.
+    * the latest session is automatically closed when a new session is started.
+  * set "Arbeitsfläche Stand_1" if needed (select from Menu: "Fenster / Arbeitsfläche / Stand_1")
+  * delete [KameraZähler] from the "Format" panel
+  * check depth of focus:
+    * set aperture to 4
+    * take a picture of the focus wedge
+    * reduce illumination
+    * 2,5 marker on the focus wedge must be sharp
+    * set illumination back to 0 and aperture back to 22
+  * create LCC raw file - once per day!
+  * set white fader
+  * take pictures
+  * end the session:
+    * check whether all names fit the file naming convention
+    * select all pictures of the session in the CaptureOne software
+    * set "LCC" using the day's LCC raw file and set "Schärfe" and "Klarheit" to the "Stand_01" default. Be aware that if many pictures were taken, the LCC preset and the defaults may take a few seconds to highlight in orange.
+    * develop pictures as desired (siehe developing)
-** !! important notice: please do not personalize setting of the software !! **
 == W: Mamiya-Leaf startup seqeuence  ==
@@ Line 316: / Line 345: @@
 > Note: Ensure that the camera power supply is turned off before proceding!
-) Day-to-day workflow
+) Computer startup:
-  * start computer and camera (see computer-startup and camera-startup) - letzte verwendete Session wird geöffnet
-  * neue Session starten - Benennung mit Tagesdatum _01 oder _02 für Vormittag/Nachmittag bzw. Wechsel (Bsp: YYMMDD_01) - alte Session wird automatisch geschlossen
-  * Arbeitsfläche Stand_1 einstellen (select from Menu: "Fenster / Arbeitsfläche / Stand_1")
-  * Bild von Schärfekeil aufnehmen - Überprüfung mit Blende 4 (Punkt auf 3,5 muss scharf sein!) - Blende zurückstellen (22)!!!
-  * LCC-Profil erstellen (Benennung YYMMDD, siehe LCC-profile) und Weißabgleich setzen - 1x pro Tag!
-  * Bilder aufnehmen
-  * Am Ende der Sitzung checken ob die Benennung den Regeln entspricht (keine Leerzeichen,... siehe Filenaming conventions)
-  * LCC, Schärfe und Klarheit (Voreinstellung für Schärfe und Klarheit "Stand_1" - Werte siehe Annotations) auf alle Bilder übernehmen (markieren und einstellen) - kann bei vielen Bildern verzögert sein, immer warten bis Stand_1 orange unterlegt ist vor dem Klicken!!!
-  * Alle gewünschten Bilder markieren und entwickeln (siehe Entwickeln)
-) Computer startup:
   * Start computer
   * Wait until startup and login are completed.
@@ Line 336: / Line 353: @@
       * if status light is still off, check the battery and replace it if necessary!
 ) Camera startup:
   * Switch on power supply. (This releases one flash and) the camera shutter can be heard.
   * Wait ten seconds until the system is completely started
@@ Line 345: / Line 362: @@
 {{https://docs.google.com/drawings/d/1eOCbckuXWvzzUfqEJbumVKGapI7xS-vFZhNpLXoE7LI/pub?w=721&h=720&.png?721x720&recache| digitisation - CaptureOne Software}}
-) Camera activation
+) Camera activation:
   * Open the CaptureOne program
@@ Line 357: / Line 374: @@
     * Check the battery of the camera.
     * Check if the camera is in standby mode:
-      ## * Release camera manually to wake up from standby mode. ##
+      * Release camera manually to wake up from standby mode.
       * If this is without result, turn back on digital release. The connection should now be established but no release of flashlights possible (the green status light on the camera body is blinking).
       * Switch of power line for 20 seconds. After turning on the power again you should see a flash and the green status light on the camera should be on (not blinking). Release from the CaptureOne software should now be possible.
-) Schärfe einstellen
+) Checking the depth of focus:
-> Note: nur machen wenn das Bild unscharf ist!
+> Note: please do this only if the picture is not sharp!
-  * Schärfekeil aufstellen
+  * set up the focus wedge
-  * Blende ganz aufmachen (Blende 4)!!!
+  * set aperture to 4
-  * Livebild einschalten (Kamerasymbol)
+  * turn on live feed (camera symbol)
-  * Objektivring drehen (Bild wird unscharf) und dann langsam und vorsichtig in die Gegenrichtung drehen um sich an die richtige Schärfe anzunähern (Kontrolle über Livebild - kurze Verzögerung!!!)
+  * turn the focussing ring of the camera lens till the 2,5 marking on the focus wedge is sharp and clear. Be aware of the short delay between live feed and actual movement.
-  * Schärfeeinstellung auf 3,5
+  * set aperture back to 22
-  * Blende zurück auf 22 und Kontrollbild machen
+  * take a picture, name it "Schärfe_(date)" and check the result
+  * close the CaptureOne Software. (Note: This is mandatory! using the live feed may cause problems otherwise.)
+  * wait for 10 seconds
+  * restart the CaptureOne Software
+    * If you can not take photos after restarting the program, shut down the computer and the power supply and restart the whole system.
-) LCC profile
-> Note: this step has to be taken every day!
+) Creating the LCC raw file
-  * Vorbedingungen (kein Beleg! keine Bearbeitung vorhanden)
+> Note: this step has to be taken every day!
-  * Blitz auf 10 erhöhen
-  * Opalscheibe vor Objektiv halten und auslösen
-  * select from Menu "Objektiv" - "LCC" - "LCC erstellen" - beide Punkte anklicken - "Erstelle" - warten bis fertig ist
-  * mit Pipettentool Weißabgleich setzen, dazu in das Bild klicken
-  * LCC-Profil speichern - im Menü Voreinstellungen "Benutzereinstellungen sichern..." (Format YYMMDD)
-  * Blitz zurück auf 8,7 stellen
-  * ein Photo zur Blitzentladung machen
-) Taking pictures
+> Note: this has to be done BEFORE any pictures are taken and WITHOUT any specimens on the table.
+  * set flash to 10 (on both devices).
+  * place the oplaine disk in front of the camera lens, take a picture and name it "LCC_(date)"
+  * select the picture, click the right mouse button and select "LCC erstellen"
+  * select the pipette tool and use it on the picture to configure the white fader
+  * set both flash devices back to 9,1
+  * restart the CaptureOne Software
+  * take a photo to reconfigure the flash devices
+    * If you can not take photos after restarting the program, shut down the computer and the power supply and restart the whole system.
+) Taking pictures
   * search for the specimen in the database and copy the specimen number
@@ Line 394: / Line 418: @@
   * mark the specimen as processed and put it away
-) Entwickeln
+) End session:
-> Note: Aktivierung von Stapelverarbeitung (links oben)!
+  * Select all photos except "Schärfe_(date)" and "LCC_(date)"
+  * Set "Schärfe" (sharpness) and "Klarheit" (clarity) to "stand_01"
+  * Select all photos except "Schärfe_(date)"
+  * Click the right mouse button and select "LCC zuweisen". Wait till the operation has finished - be aware that there is no progress bar!
-  * Menüpunkt "Ausgabe" (Zahnradsymbol links)
+If this is not the first session of the day you have to import the LCC-RAW-File:
-      * Verarbeitungsvorgaben: Format "TIFF" "8bit"
+  * Close the CaptureOne Software
-      * Ausgabeort: "Output"
+  * Open the capture folder of first session of the day in Windows explorer and copy/paste "LCC_(date)" to the capture folder of your current session.
-  * Klick auf "Verarbeiten"
+  * Reopen the CaptureOne Software. The "LCC_(date)" picture should now be available.
-  * Warten (bis zu 10sek pro Bild?) - Zahnradsymbole auf Bildern ändern Farbe von orange nach grau
+  * Select the "LCC_(date)" picture, click the right mouse button and select "LCC erstellen".
+  * Select all photos except "Schärfe_(date)"
+  * Click the right mouse button and select "LCC zuweisen". Wait till the operation has finished - be aware that there is no progress bar!
+> Note: Activate from menu "Stapelverarbeitung" (upper left)!
+  * Select all photos except "Schärfe_(date)" and "LCC_(date)"
+  * click "Ausgabe" (cogwheel symbol) and check the settings:
+      * "Verarbeitungsvorgaben" (development settings): Format "TIFF" "8bit"
+      * "Ausgabeort" (ouput folder): "Output"
+  * click "Verarbeiten"
+  * wait (up to 10 sec per photo) - the cogwheel symbols on th pictures change their color from orange to gray.
+) Trash files, Jacq-Import & Backup
+  * Open the session folder in Windows Explorer and open "trash". This folder contains all images deleted in your current session. Delete all unwanted images from this folder. Keep images which show technical errors (color dots etc) and report them to Heimo.
+  * Open the output folder of your session and copy all images
+  * Open the jacq-import directory and create a folder for your session. Stick to the naming conventions!
+  * Paste the images to the newly created folder.
+  * Compare number and file size of the images with the original folder to make sure everything has been copied correctly
+  * Convert the original images to EIP format and store them in their respective folder on the backup drive.
 ) Screen calibration:
@@ Line 418: / Line 465: @@
   * The lower right buttons turns to "Finish". Click it.
   * The software switches back to start screen, the lower right buttons turns to "Quit".
- screen shots
 ) Annotations and troubleshooting
-  * check der Grundeinstellungen
+  * base settings:
-      * Blende 22
+      * "Blende" (aperture): 22
-      * Belichtung 1/125
+      * "Belichtung" (illumination): 1/125
-      * Blitz 8,7
+      * "Blitz" (flash): 9,1
       * Proof Profil "AdobeRGB (1998)"
-  * check Schärfung - Voreinstellung "Stand_1"
-      * Stärke 295
+  * check "Schärfung" (sharpening) - pre-setting "Stand_1"
-      * Radius 0,9
+      * "Stärke" (intensity): 295
-      * Schwellenwert 1,0
+      * Radius: 0,9
-  * check Klarheit - Voreinstellung "Stand_1"
+      * "Schwellenwert" (treshold): 1,0
+  * check "Klarheit" (clearness) - pre-setting "Stand_1"
       * Methode "Durchschlag"
-      * Klarheit -7
+      * "Klarheit" (clearness): -7
-      * Struktur 36
+      * "Struktur" (structure): 36
-  * Beleg mit mehreren Datenbankeinträgen (A,B,C,...) kann in Explorer kopiert und umbenannt werden - ** Achtung ** es wird Originalbild kopiert (Geraderichten und Ausschneiden fehlt!) - Kontrolle in Software ob Name übernommen!
-  * Positionierung großer Belege funktioniert gut über Livebild-Einstellung (auf Blende 4 gehen - vor Bildaufnahme wieder zurück auf 22 stellen!!!)
+  * Specimens with more than one database entry (A,B,C,...) can be copied and renamed in the Explorer. **Attention:** This is a copy of the raw image and none of the adjustments (straightening, cutting etc) are applied. Always be sure to check the result of this in the CaptureOne software!
+  * Positioning of large-scale specimens works best via Live-Imaging. Set the aperture of the camera to 4 for live feed but remember to set it back to 22 für taking the photo!
+  * Low storage space message: Please contact Heimo as soon as possible!
+  * Most issues while taking photos can be solved by closing and re-opening the CaptureOne software. Remember that your session is saved and automatically re-opened on software restart. You can continue taking pictures without further steps.